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Table 1 Databases, tools, resources and software used in the present study

From: In silico molecular cytogenetics: a bioinformatic approach to prioritization of candidate genes and copy number variations for basic and clinical genome research

Database-tool-resource-software URL Acquired data or application
UCSC Genome Browser (Version: Feb. 2009 GRCh37/hg19) http://genome.ucsc.edu/ Mapping of molecular cytogenetic data
Ensembl Genome Browser http://www.ensembl.org/index.html
NCBI Build 37.1/NCBI Map Viewer http://www.ncbi.nlm.nih.gov/projects/mapview/map_search.cgi?taxid=9606
Database of Genomic Variants http://dgvbeta.tcag.ca/dgv/app/home?ref=GRCh37/hg19 Data on natural genome variations
OMIM (online Mendelian inheritance in Man) http://www.omim.org/ Clinical data
DECIPHER (Database of Chromosomal Imbalance and Phenotype in Humans using Ensembl Resources) http://decipher.sanger.ac.uk/
Phenotype-Genotype Integrator (PheGenI) http://www.ncbi.nlm.nih.gov/gap/PheGenI
AutDB (web-based searchable database for autism research) http://www.mindspec.org/autdb.html
BioGPS http://biogps.org[17] Gene expression data
Cytoscape software (Version: 3.1.1) http://www.cytoscape.org/[60] Interactome analysis
Reactome http://www.reactome.org/[61] Pathway analysis
Pathway commons http://www.pathwaycommons.org
KEGG (Kyoto Encyclopedia of Genes and Genomes) http://www.genome.jp/kegg/
NCBI BioSystems Database http://www.ncbi.nlm.nih.gov/biosystems
NCBI gene http://www.ncbi.nlm.nih.gov/gene/ Various gene information
PubMed http://www.ncbi.nlm.nih.gov/pubmed/ Bibliographic searches and evaluations
Google scholar http://www.scholar.google.com/