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Table 2 Summary of the homozygous loci found on chromosome 2 of fetus 2

From: Prenatal diagnosis of paternal uniparental disomy for chromosome 2 in two fetuses with intrauterine growth restriction

Gene

Location

Variant

Zygote

Pathogenicity prediction

GnomAD (MAF %)

Fetus

Father

Mother

SIFT

Poly-Phen

Clin-Pred

Mutation Taster

TTN

chr2:179,392,289

c.107564G > A(p.Ser35855Asn)

Hom

Het

Wild

Tol

Beni

Del

Poly

MMADHC

chr2:150,432,353

c.481 T > A(p.Phe161Ile)

Hom

Het

Wild

Del

Poss dam

Tol

Dis Caus

EA: 0.1220

ATP6V1B1

chr2:71,190,308

c.926A > G(p.Glu309Gly)

Hom

Het

Wild

Del

Beni

Dis Caus

EA: 0.4261 Fin: 0.003981

          

SA: 0.003266

VWA3B

chr2:98,709,718

c.163A > T(p.Ile55Phe)

Hom

Het

Wild

Del

Prob Dam

Del

Poly

NFE: 0.001554

          

EA: 0.005119

  1. Hom Homozygous, Het Heterozygous, Wild Wild-type, Del deleterious, Tol tolerated, Prob dam probably damaging, Poss dam possibly damaging, beni benign, Dis Caus disease causing, Poly polymorphism, Neu neutral
  2. Higher GERP scores are more deleterious
  3. The gnomAD MAF: NFE non-Finnish European, Lat Latin, Afr African, EA East Asian, Fin Finish, SA South Asian