Table 1 Clones that presented copy number variation detected through aCGH screening of patient genome
From: 7q36 deletion and 9p22 duplication: effects of a double imbalance
Clones | Status of alteration | Cytogenetic location | Genomic coordinates (GRCh36 hg18) | Genes present in the region |
|---|---|---|---|---|
RP11-43 L19 | Loss | 7q36.1 | 151,167,622: 151,325,223 | PRKAG2, GALNTL5, LOC100505483 |
RP11-958 M14 | Loss | 7q36.2 | 152,448,407: 152,551,324 | - |
RP11-79 K9 | Loss | 7q36.2 | 153,634,608: 153,780,253 | DPP6 |
RP11-80 J22 | Loss | 7q36.2 | 154,256,381: 154,418,755 | DPP6, LOC100132707, PAXIP1 |
RP11-69O3 | Loss | 7q36.3 | 155,193,647: 155,348,385 | RBM33, SHH |
RP11-264P5 | Loss | 7q36.3 | 155,707,993: 155,735,684 | - |
RP11-260H17 | Loss | 7q36.3 | 155,945,431: 156,046,133 | LINC00244 |
RP11-58 F7 | Loss | 7q36.3 | 157,265,524: 157,458,433 | PTPRN2, LOC100506585 |
RP11-230 K23 | Loss | 7q36.3 | 157,779,951: 157,964,008 | PTPRN2 |
GS-3-K23 | Loss | 7q36.3 | 158,551,928: 158,650,980 | VIPR2 |
RP11-343D17 | Gain | 9p23 | 9,188,596: 9,374,041 | PTPRD |
RP11-32D4 | Gain | 9p23 | 11,469,225:11,641,680 | - |
RP11-79B9 | Gain | 9p23 | 14,010,094:14,171,677 | NFIB |
RP11-109 M15 | Gain | 9p22.3 | 16,141,129:16,325,493 | - |