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Table 1 Pathways organized by clusters

From: Laundering CNV data for candidate process prioritization in brain disorders

Cluster namePathways
Neurodegenerative diseases Neurodegenerative diseases
Proteasome Downregulation of TGF-beta receptor signaling
Signaling by ERBB4 Signaling by ERBB4
Nuclear signaling by ERBB4
Transcription regulation SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
RNA polymerase II repressing transcription factor binding
RNA polymerase II activating transcription factor binding
Regulation of TP53 Regulation of TP53 degradation
Regulation of TP53 activity through acetylation
p53 binding
Signaling by NOTCH Activated NOTCH1 transmits signal to the nucleus
Signaling by NOTCH2
Senescence Oncogene induced senescence
Mitosis Mitotic cytokinesis
Spindle pole
DNA repair HDR through single strand annealing (SSA)
Nucleotide-excision repair, DNA damage recognition
Vesicles functioning SNAP receptor activity
Actin functioning Stress fiber
Podosome
Macromolecular interactions Insulin receptor binding
Protein kinase C binding
Fibroblast growth factor receptor binding
Core promoter sequence-specific DNA binding
RNA polymerase II core binding
Beta-amyloid binding
Epidermal growth factor receptor binding
B cells functioning B cell homeostasis
B cell apoptotic process