Table 1 The distribution of missing SNPs on chromosomes in substitution lines
Chromosome | Number | Sub L1 | Sub L2 | Sub L3 | |||
|---|---|---|---|---|---|---|---|
Number | Ratio | Number | Ratio | Number | Ratio | ||
1A | 2632 | 35 | 1.3% | 28 | 1.1% | 26 | 1.0% |
1B | 2630 | 27 | 1.0% | 36 | 1.4% | 27 | 1.0% |
1D | 2495 | 19 | 0.8% | 24 | 1.0% | 21 | 0.8% |
2A | 2622 | 14 | 0.5% | 18 | 0.7% | 20 | 0.8% |
2B | 2578 | 33 | 1.3% | 31 | 1.2% | 45 | 1.7% |
2D | 2590 | 204 | 7.9% | 207 | 8.0% | 205 | 7.9% |
3A | 2194 | 31 | 1.4% | 24 | 1.1% | 32 | 1.5% |
3B | 2629 | 32 | 1.2% | 34 | 1.3% | 46 | 1.7% |
3D | 2072 | 17 | 0.8% | 21 | 1.0% | 23 | 1.1% |
4A | 2573 | 34 | 1.3% | 35 | 1.4% | 41 | 1.6% |
4B | 2601 | 1535 | 59.0% | 1560 | 60.0% | 1575 | 60.6% |
4D | 1087 | 28 | 2.6% | 36 | 3.3% | 30 | 2.8% |
5A | 2633 | 37 | 1.4% | 53 | 2.0% | 44 | 1.7% |
5B | 2622 | 39 | 1.5% | 50 | 1.9% | 64 | 2.4% |
5D | 2142 | 33 | 1.5% | 40 | 1.9% | 48 | 2.2% |
6A | 2623 | 40 | 1.5% | 49 | 1.9% | 40 | 1.5% |
6B | 2601 | 94 | 3.6% | 107 | 4.1% | 91 | 3.5% |
6D | 2067 | 30 | 1.5% | 30 | 1.5% | 24 | 1.2% |
7A | 2601 | 28 | 1.1% | 42 | 1.6% | 41 | 1.6% |
7B | 2542 | 212 | 8.3% | 219 | 8.6% | 198 | 7.8% |
7D | 2625 | 23 | 0.9% | 23 | 0.9% | 23 | 0.9% |