Skip to main content

Advertisement

Table 2 Selected LTR-RTs from CENSOR results

From: A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons

Name From To Name From To Class Name
scaffold1|size42338 4200 5326 Gypsy-48_GR-I 1376 2498 LTR/Gypsy sca1 (4200-5326)
scaffold1|size42338 13782 17200 Copia-80_ST-I 194 3604 LTR/Copia sca1 (13782-17200)
scaffold1|size42338 31153 32254 Gypsy-48_GR-I 3205 4308 LTR/Gypsy sca1 (31153-32254)
scaffold2|size26803 7498 8637 Gypsy-48_GR-I 76 1221 LTR/Gypsy sca2 (7498-8637)
scaffold2|size26803 23904 25399 Gypsy-18_GR-I 1326 2899 LTR/Gypsy sca2 (23904-25399)
scaffold3|size22097 10623 11420 Gypsy-18_GR-I 2893 3697 LTR/Gypsy sca3 (10623-11420)
scaffold3|size22097 17834 19556 Gypsy-48_GR-I 2773 4562 LTR/Gypsy sca3 (17834-19556)
scaffold3|size22097 20731 21832 Gypsy-48_GR-I 3260 4363 LTR/Gypsy sca3 (20731-21832)
scaffold2|size26803 13047 13565 Copia-2_JC-I 4861 5382 LTR/Copia sca2 (13047-13565)
scaffold2|size26803 19133 19572 Gypsy-1_JC-I 276 715 LTR/Gypsy sca2 (19133-19572)
scaffold2|size26803 18785 21330 Gypsy-48_GR-I 50 2596 LTR/Gypsy sca2 (18785-21330)
scaffold3|size22907 5533 6040 Gypsy-1_JC-I 269 774 LTR/Gypsy sca3 (5533-6040)