Skip to main content

Advertisement

Table 2 The 68 ECBs detected in this study in HPI given as cytoband and genomic data (GRCh37/hg19) as well as FISH-probes used and comparison to HLA

From: Application of multicolor banding combined with heterochromatic and locus-specific probes identify evolutionary conserved breakpoints in Hylobates pileatus

Breakpoint (cytoband) Narrowed down by Localization acc. to GRCh37/hg19 Same ECB in HLA [8]
1p35.2 RP4-669K10 / RP11-114B7 28,853,741–33,101,404 +
1p33 RP11-330M19 / RP4-631H13 48,285,909–53,304,823 +
1p31.1 RP4-759M20 / RP5-944F13 67,033,180–70,103,142 +
1q23.1 RP11-307C12 / RP11-343F16 154,965,587–164,006,044 +
1q25.2 RP5-990P15 / RP11-181K3 178,490,946–183,063,114 +
1q32.2 RP11-110E24 / RP11-434B7 210,211,975–213,224,588 +
2p22.3 RP11-23B13 / RP11-119B15 30,979,722–35,864,069 +
2p11.2 RP11-316G9 / RP11-708D7 90,202,000–95,617,775 +
2p11.1 ~ q11.1 n.a. 90,500,000–96,800,000 -
2q14.2 Proximal to RP11-69O6 ~110,000,000–121,987,648 +
2q22.3 RP11-107E5 / RP11-21M18 145,324,328–151,156,597 +
3p26.3 Proximal to subtel3pter ~2,000,000–~ 5,000,000 +
3p14.3 RP11-904G16 / RP11-229A12 54,646,599–57,395,394 -
3p12.3 RP11-552N9 / RP11-16M12 72,550,809–78,313,071 +
3q22.1 RP11-221E20 / RP11-517B11 128,695,100–131,245,291  
3q24 RP11-88H10 7 RP11-500K7 145,702,132–147,840,000  
4p11 ~ q11 n.a. 48,200,000–52,700,000 +
4q13.1 RP11-498E11 / RP11-92H22 66,083,151–71,660,470 -
4q26 MCB 126,000,000–137,000,000 +
5p11 ~ q11.1 n.a. 46,100,000–50,700,000 +
5q14.1 CTD-2200O3 / RP11-356D23 76,503,000–81,368,874 +
5q31.1 RP11-729C24 / CTD-2562E1 131,949,164–134,147,482 +
6p21.2 RP3-431A14 36,643,279–36,838,641 +
6p11.1 ~ q11 n.a. 58,700,000–63,300,000 +
6q15 RP11-223J24 / RP1-122O8 86,460,000–90,317,182 +
7p22.3 Distal to subtel7pter 0–~ 2,500,000 +
7q21.11 RP11-235F21 / RP11-448A3 76,680,916–81,315,990 +
8p22 RP11-19N21 / RP11-459H21 16,574,193–21,137,316 +
8p11.1 ~ q11.1 n.a. 43,100,000–48,100,000 +
8q21.11 RP11-347D13 / RP11-48D4 70,768,835–77,707,273 +
9p24.3 Proximal to subtel9pter 0–~ 2,000,000 +
9p12 Proximal to RP11-128P23 35,360,000–~ 50,000,000 +
9q21.12 Distal to RP11-373A9 72,849,245–~ 90,000,000 +
10p12.1 RP11-478H13 / RP11-379L21 23,279,768–29,095,050 +
11p15.5 Distal to subtel11pter 0–~ 1,200,000 +
11p11.2 Distal to RP11-397M16 48,150,000–~ 50,000,000 +
11p11.11-q11 n.a. 51,600,000–55,700,000 -
11q13.1 Distal to RP11-399J13 64,808,042–~ 70,000,000 +
12p11.21 RP11-517B23 31,471,644–32,029,051 -
12q13.1 Proximal to RP11-112N23 ~45,000,000–50,731,377 +
12q13.3 RP11-112N23 / RP11-629N8 50,912,474–65,153,301 +
12q22 RP11-24I19 / RP11-406H4 94,634,754–99,487,137 +
13p13 n.a. 0–~ 200,000 -
13q21.32 RP11-100C24 / RP11-187E23 57,831,960–67,194,978 -
13q33.2 RP11-564N10 / RP11-141M24 102,655,660–109,369,625 +
14p13 n.a. 0–~ 200,000 -
14q21.2 RP11-35B20 / RP11-262M8 45,887,918–52,697,235 +
15p13 n.a. 0–~ 200,000 -
15q22.1 RP11-215J7 / RP11-219B17 55,027,961–60,973,768 +
15q26.3 Distal to subtel15qter ~102,200,000–102,531,392 +
16p12.2 RP11-705C1 24,089,175–24,270,169 -
16q22.2 RP5-991G20 / RP11-24I3 72,825,522–77,786,210 +
17p13.3 Proximal to subtel17pter 0–~ 500,000 +
17p11.2 Distal from RP11-746M1 ~15,000,000–21,160,776-28 +
17q11.2 Distal from RP11-403E9 28,495,981–~ 40,000,000 -
17q21.1 RP11-47L3 / RP11-58O9 33,661,870–38,501,211 +
17q22 RP5-843B9 / RP11-429O1 46,228,000–50,467,875 +
17q23.2 RP11-142B17 / RP11-74H8 56,840,764–64,676,149 +
18p11.32 Proximal to subtel18pter 0–~ 200,000 +
18p11.1 ~ q11.1 n.a. 15,400,000–19,000,000 -
19p13.2 RP11-565J3 / RP11-79F15 6,979,038–8,853,332 +
19q13.12 RP11-430N3 / RP11-649P22 36,673,365–38,450,859 +
19q13.31 RP11-537N4 / RP11-21J15 40,997,000–45,034,762 +
19q13.32 RP11-21J15 / RP11-1089K2 45,208,382–47,311,583 +
19q13.42 RP11-10I11 / RP11-44L20 51,622,674–53,472,377 +
21p11.1 ~ q11.1 n.a. 10,900,000–14,300,000 +
22p13 n.a. 0–~ 200,000 -
22q13.33 Distal to subtel22qter ~51,000,000–51,304,566 +