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Table 1 Summary of LCSH, associated clinical findings, and imprinted genes

From: Long contiguous stretches of homozygosity spanning shortly the imprinted loci are associated with intellectual disability, autism and/or epilepsy

Case #

Chromosomal region

Age

Clinical features

Size, kb

Genes (imprinted)

1

7q21.3

5 years

Developmental delay, autistic behavior, hyperactivity

1098

SGCE, PEG10 PPP1R9A

2

7q21.3

11 years

Intellectual disability, developmental delay

1062

SGCE, PEG10, PPP1R9A, TFPI2

3

7q31.33q32.3

2 years

Intellectual disability, developmental delay, microcephaly, seizures, facial dysmorphisms, muscular hypotonia

4257

KLF14, MEST, COPG2, MESTIT1, CPA4

4

7q32.1q32.2

2 years 7 months

Intellectual disability, developmental delay, microcephaly, seizures, facial dysmorphisms

1089

CPA4

5

7q32.2

3 years

Intellectual disability, developmental delay, facial dysmorphisms

1033

CPA4, MESTIT1, MEST, COPG2

6

7q32.2

15 years

Intellectual disability, developmental delay, congenital heart defect

1020

KLF14, MEST, COPG2, MESTIT1, CPA4

7

11р15.5р15.4

5 years

Intellectual disability, autistic behavior, microcephaly, seizures, facial dysmorphisms, somatic overgrowth

1360

CDKN1C, KCNQ1DN, KCNQ1, SLC22A18AS, SLC22A18, PHLDA2, NAP1L4, OSBPL5,

8

11р15.5р15.4

10 years

Developmental delay, autistic behavior, facial dysmorphisms, somatic overgrowth

1147

IGF2, H19, CDKN1C, KCNQ1DN, KCNQ1, SLC22A18, PHLDA2, NAP1L4, OSBPL5, IGF2AS, INS, TH, ASCL2, TSPAN32, CD81, TSSC4, TRPM5, KCNQ1OT1, SLC22A18AS

9

11p15.5p15.4

4 years

Intellectual disability, developmental delay, macrocephaly, feeding difficulty, umbilical hernia, hepatomegaly, undescended testis, facial dysmorphisms, short neck

1554

CDKN1C, KCNQ1, KCNQ1OT1, ASCL, TSPAN32, CD81, TSSC4, TRPM5, SLC22A18AS, SLC22A18, PHLDA2 NAP1L4, OSBPL5

10

15q11.2

2 years 10 months

Intellectual disability, developmental delay, feeding difficulty, facial dysmorphisms

1068

NPAP1, SNRPN

11

15q11.2

4 years

Intellectual disability, developmental delay, hyperactivity, facial dysmorphisms, seizures

1158

SNRPN, PAR1, IPW, PAR5,

12

15q11.2

5 years

Developmental delay, autistic behavior, seizures, facial dysmorphisms

1002

NPAP1, SNRPN

13

15q11.2

5 years

Developmental delay, autistic behavior, fetal cerebral ventriculomegaly, facial dysmorphisms

1067

NPAP1

14

15q11.2

18 years

Intellectual disability, personality disorder

1224

NPAP1, SNRPN, SNURF, SNORD107, SNORD108, SNORD109B, SNORD109A UBE3A