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Table 2 Details of microarray-based genomic profiling

From: Identification of prognostic relevant chromosomal abnormalities in chronic lymphocytic leukemia using microarray-based genomic profiling

Patient ID

CytoScan HD Array

HumanOmniExpress Array

Genes in CNAs <5 Mb

Type of 13q14 deletion

1

(1–22)x 2,(XY)x1

Not done

  

2

13q14.2q14.3(50,584,486-51,470,499)x1

Not done

DLEU2 DLEU1 DLEU7

I

3

6p21.1p11.2(41,934,382-57,160,585)x1

Not done

  

13q14.2q14.3(48,722,871-51,051,951)0 ~ 1

 

RB1 DLEU2 DLEU1

II

13q14.11qter(43,405,208-115,095,705)x2 hmz

  

(bi-allelic)

17pterp11.2(526–21,90,786)x1

   

4

2pterp13.3(12,771-69,686,286)x3

Not done

  

6pterp21.33(159,975-31,799,736)x1

   

7q36.1qter(149,853,609-159,119,707)x1

   

11q13.5q23.3(76,888,344-116,354,467)x1

   

13q14q14.3(40,480,469-52,003,234)x1

  

II

5

1q43(234,529,702-242,132,559)x1

Not done

  

(12)x3

   

6

13q14.2(50,195,826-51,850,196)x1

Not done

DLEU2 DLEU1 DLEU7

I

13q14.2q14.3(50,650,988-51,342,279)x0

 

DLEU2 DLEU1

(bi-allelic)

7

1q42.12q42.2(224,729,057-231,273,551)x1

1q42.12q42.2(224,726,060-231,572,255)x1

  

(12)x3

(12)x3

  

17pterp11.2(526–21,076,299)x1 ~ 2

17pterp11.2(8,547-22,208,945)x1

  

8

13q14.2(50,519,996-51,503,800)x1

not done

DLEU2 DLEU1 DLEU7

I

9

2pterp14(12,771-67,026,521)x2 ~ 3

2pterp14(12,771-67,026,521)x2 ~ 3

  

6q14.1q21(80,048,777-111,874,976)x1

6q14.1q21(80,134,141-111,850,742)x1

  

17pterp11.2(526–18,922,732)x1 ~ 2

17pterp11.2(15,463-22,208,949)x1

  

17p11.2(19,143,976-22,261,792)x2 ~ 3

17p11.2(19,075,156-21,591,064)x2 ~ 3

SPECC1

 

20pterp11.1(61,569-25,598,847)x1 ~ 2

20pterp11(75,254-25,581,424)x1 ~ 2

  

10

(8)x2 ~ 3

(8)x2 ~ 3

  

17pterp11.2(526–21,439,423)x1 ~ 2

17pterp11.2(8,547-22,002,556)x1

  

17p11.2qter(21,442,422-81,041,938)x2 ~ 3

17q11.2qter(25,295,032-81,051,007)x3

  

11

Xq21.33qter(95,976,563-155,233,846)x2

Xq21.33qter(96,042,106-154,821,956)x2

  

3p25.3q13.12(11,420,458-106,634,792)cth

3p25.3q13.12(11,420,458-106,613,301)cth

  

11p15.4q23.3(4,388,905-114,957,588)cth

11p15.4q23.3(4,400,801-114,958,994)cth

  

12q15qter(68,548,174-133,778,166)x3

12q15qter(68,468,711-133,777,645)x3

  

13q14.2(47,596,800-50,761,018)x1 ~ 2

13q14.2(47,314,896-51,835,485)x1 ~ 2

RB1 DLEU1 DLEU2

II

12

3q22.1qter(133,392,418-197,851,986)x2 ~ 3

Not done

  

6q23.2qter(133,742,371-170,919,482)x1 ~ 2

17pterp11.1(526–22,261,792)x1 ~ 2

19pterp13.3(260,912-2,638,256)x2 ~ 3

13

(1–22)x2,(XY)x1

Not done

  

14

(12)x3

Not done

  

15

(12)x3

Not done

  

(18)x3

(19)x2 ~ 3

16

13q14.2q14.3(49,267,418-52,710,335)x1 ~ 2

13q14.2q14.3(49,253,519-52,418,598)x1

DLEU2 DLEU1 DLEU7

II

17p13.1(7,285,282-7,613,708)x1 ~ 2

17p13.1(7,208,197-7,584,400)x1

TP53

 

17

2q31.2qter(178,126,546-242,783,384)x2 hmz

2q31.1qter(178,522,104-242,082,222)x2 hmz

  

(12)x3

(12)x3

  

18

1q31.1(186,115,025-186,574,022)x1

1q31.1(186,126,099-186,576,930)x1

TPR

I

4p16.3(1,817,831-3,332,468)x1

4p16.3(1,824,020-3,326,393)x1

WHSC1

 

13q14.2q14.3(49,834,338-51,885,720)x1

13q14.2q14.3(49,826,508-51,837,299)x1

DLEU2 DLEU1 DLEU7

 

15q15.1(41,726,490-42,269,397)x1

15q15.1(41,726,490-42,269,397)x1

MGA

 

19

(1–22)x2,(XY)x1

(1–22)x2,(XY)x1

  

20

13q14.2q14.3(49,743,769-51,421,152)x1 ~ 2

 

DLEU2 DLEU1 DLEU7

I

6pterp22.3(156,975-24,464,741)x2 hmz

6pterp22.1(170,044-27,221,519)x2 hmz

  

20q11.23qter(36,212,125-62,915,555)x2 hmz

20q11.22qter(32,006,475-62,155,324)x2 hmz

  

21

2p22.1p16.3(39,286,190-52,873,900)x1 ~ 2

Not done

  

8q12.1q13.3(56,845,311-71,349,857)x1 ~ 2

   

10q24(102,832,471-104,451,853)x1 ~ 2

 

NFKB2

 

13q14.2q14.3(48,564,169-51,710,957)x1

 

RB1 DLEU2 DLEU1

II

17pterp11.1(526–22,261,792)x2 hmz

 

DLEU7

 

22

Not done

(1–22)x2,(XY)x1

  

23

Not done

11q21.1q23.3(99,007,487-116,429,253)x1

  
 

13q13.3q14.11(34,736,943-41,533,052)x1

  
 

13q14.2q31.1(46,831,590-81,829,786)x1

 

II

24

Not done

2q31.1q37.3 (178,522,104-242,082,222)x3

  
 

(12)x3

  

25

Not done

2p25.3p11.2(18,674-88,509,321)x3

  

4q12(53,897,152-54,418,635)x1

FIP1L1

 

4q31.3(153,069,783-154,890,126)x1

FBXW7

5q21.2q35.3(104,253,119-180,693,127)x3

 

7pterq21.2(57,660-92,377,183)x2 hmz

  

10p15.3p12.3(111,955-20,876,388)x1

  

11q14.1q14.2(84,356,651-87,287,369)x1

PICALM

 

11q22.3-q23.1(107,154,315-112,417,074)x1

  

11q23.2(113,500,513-114,995,252)x1

ZBTB16

 

11q23.3(116,042,048-117,199,870)x1

PAFAH1B2 PCSK7

 

18q22.3q23(73,752,499-78,011,963)x1

CTDP1

 

21q22.11q22.3(32,065,821-48,042,513)x3

  

26

Not done

(12)x3

  

27

Not done

13q14.2q14.3(50,583,562-51,545,282)x0

DLEU2 DLEU1 DLEU7

I

(bi-allelic)

28

Not done

6q14.3q24.3(87,140,674-148,617,199)x1

  

13q14.2q14.3(50,570,191-51,516,305)x1

DLEU2 DLEU1 DLEU7

I

15q13.3q26.1(32,955,095-92,747,286)x1

  

17p13.3p11.2(103,469-18,820,457)x1

  
  

17q11.1q25.3(25,311,244-80,895,745)x3

  
  1. CNAs: Copy number alterations.
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Molecular Cytogenetics

ISSN: 1755-8166