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Table 1 Genetic abnormalities detected by whole genome CNV + SNP array hybridization

From: Genome-wide acquired uniparental disomy as well as chromosomal gains and losses in an uterine epithelioid leiomyoma

Chromosome

Type

CN

Cytobands

Size (kbp)

Genes

1

UPD

2

All

  
 

Loss

1

q44

74.216

OR2T2, OR2T3, OR2T5

2

UPD

2

All

  

3

UPD

2

All

  

4

UPD

2

All

  

5

UPD

2

All

  

6

UPD

2

All

  
 

Loss

1

p22.1

71.464

HCG4B, HLA-A

 

Loss

1

q22.33

189.413

TMEM244, L3MBTL3

7

UPD

2

All

  
 

Loss

1

q22.1

181.67

SH2B2, SPDYE6, LOC100289561, LOC100630923, PRKRIP1, ORAI2, ALKBH4, LRWD1, MIR5090, MIR4467, POLR2J

8

Gain

4

All

  
 

LOH

4

p12–p11.1

11659.74

71 genes

 

LOH

4

q23.3–q24.3

6392.362

14 genes

 

Loss

0

p11.22

139.855

ADAM5P, ADAM3A

9

UPD

2

All

  

10

UPD

2

All

  

11

UPD

2

All

  

12

Gain

3

All

  

13

UPD

2

All

  

14

UPD

2

All

  
 

Gain

3

q32.33

324.063

KIAA0125, ADAM6

15

UPD

2

All

  
 

Loss

1

q24.3

40.641

SCAPER

16

UPD

2

All

  

17

UPD

2

All

  

18

UPD

2

All

  

19

UPD

2

All

  
 

Loss

1

p12

677.28

ZNF682, ZNF90, ZNF486, MIR1270-2, MIR1270-1, ZNF826P, ZNF737

 

Loss

1

q13.42

107.4

KIR2DL3, KIR2DL1, LOC100287534, KIR2DL4, KIR3DL1, KIR2DS4

20

Gain

4

All

  

21

UPD

2

All

  

22

UPD

2

All

  
 

Gain

3

q11.22

138.446

MIR650, IGLL5

X

Gain

4

All

  
 

LOH

4

p11.23–p11.1

8936.629

88 genes

 

LOH

4

q11.1–q13.1

5950.032

20 genes

 

LOH

4

q13.1–q21.1

5907.594

58 genes

 

LOH

2

q27.2–q27.3

1422261

3 genes

 

LOH

4

q27.3–q28

10557350

90 genes

  1. Abbreviations: CN, Copy number.
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Molecular Cytogenetics

ISSN: 1755-8166