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Table 1 Genetic abnormalities detected by whole genome CNV + SNP array hybridization

From: Genome-wide acquired uniparental disomy as well as chromosomal gains and losses in an uterine epithelioid leiomyoma

Chromosome Type CN Cytobands Size (kbp) Genes
1 UPD 2 All   
  Loss 1 q44 74.216 OR2T2, OR2T3, OR2T5
2 UPD 2 All   
3 UPD 2 All   
4 UPD 2 All   
5 UPD 2 All   
6 UPD 2 All   
  Loss 1 p22.1 71.464 HCG4B, HLA-A
  Loss 1 q22.33 189.413 TMEM244, L3MBTL3
7 UPD 2 All   
  Loss 1 q22.1 181.67 SH2B2, SPDYE6, LOC100289561, LOC100630923, PRKRIP1, ORAI2, ALKBH4, LRWD1, MIR5090, MIR4467, POLR2J
8 Gain 4 All   
  LOH 4 p12–p11.1 11659.74 71 genes
  LOH 4 q23.3–q24.3 6392.362 14 genes
  Loss 0 p11.22 139.855 ADAM5P, ADAM3A
9 UPD 2 All   
10 UPD 2 All   
11 UPD 2 All   
12 Gain 3 All   
13 UPD 2 All   
14 UPD 2 All   
  Gain 3 q32.33 324.063 KIAA0125, ADAM6
15 UPD 2 All   
  Loss 1 q24.3 40.641 SCAPER
16 UPD 2 All   
17 UPD 2 All   
18 UPD 2 All   
19 UPD 2 All   
  Loss 1 p12 677.28 ZNF682, ZNF90, ZNF486, MIR1270-2, MIR1270-1, ZNF826P, ZNF737
  Loss 1 q13.42 107.4 KIR2DL3, KIR2DL1, LOC100287534, KIR2DL4, KIR3DL1, KIR2DS4
20 Gain 4 All   
21 UPD 2 All   
22 UPD 2 All   
  Gain 3 q11.22 138.446 MIR650, IGLL5
X Gain 4 All   
  LOH 4 p11.23–p11.1 8936.629 88 genes
  LOH 4 q11.1–q13.1 5950.032 20 genes
  LOH 4 q13.1–q21.1 5907.594 58 genes
  LOH 2 q27.2–q27.3 1422261 3 genes
  LOH 4 q27.3–q28 10557350 90 genes
  1. Abbreviations: CN, Copy number.