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Table 2 Distribution of different categories of DNA based on 454 GS FLX Titanium sequencing from test (SYCP3) and control (no antibody) ChIP experiments of male mice

From: A specific family of interspersed repeats (SINEs) facilitates meiotic synapsis in mammals

DNA type Test no. of base pairs (%) Control no. of base pairs (%) Mouse genome ave. (%)
SINEs, Total 1571293 (15.3) 2896767 (13.1) 8.2
SINE: Alu/B1 578758 (5.6) 856113 (3.9) 2.7
SINE: B2 481108 (4.7) 958107 (4.3) 2.4
SINE: B4 442437 (4.3) 908997 (4.1) 2.4
SINE: ID 27144 (0.3) 55704 (0.3) 0.3
SINE: MIR 41623 (0.4) 116746 (0.5) 0.6
LINEs 2022182 (19.6) 3930338 (17.7) 19.2
LTRs 1354824 (13.2) 2820553 (12.7) 9.9
DNA Elements 85639 (0.8) 221236 (1.0) 0.9
Unclassified/other repeats 44615 (0.4) 97630 (0.4) 0.4
Unique sequence 5220735 (50.7) 12236884 (55.1) 61.4
Total Bp Sequenced 10299288 (100.0) 22203408 (100.0) 100.0