Table 2 Distribution of different categories of DNA based on 454 GS FLX Titanium sequencing from test (SYCP3) and control (no antibody) ChIP experiments of male mice
From: A specific family of interspersed repeats (SINEs) facilitates meiotic synapsis in mammals
DNA type | Test no. of base pairs (%) | Control no. of base pairs (%) | Mouse genome ave. (%) |
|---|---|---|---|
SINEs, Total | 1571293 (15.3) | 2896767 (13.1) | 8.2 |
SINE: Alu/B1 | 578758 (5.6) | 856113 (3.9) | 2.7 |
SINE: B2 | 481108 (4.7) | 958107 (4.3) | 2.4 |
SINE: B4 | 442437 (4.3) | 908997 (4.1) | 2.4 |
SINE: ID | 27144 (0.3) | 55704 (0.3) | 0.3 |
SINE: MIR | 41623 (0.4) | 116746 (0.5) | 0.6 |
LINEs | 2022182 (19.6) | 3930338 (17.7) | 19.2 |
LTRs | 1354824 (13.2) | 2820553 (12.7) | 9.9 |
DNA Elements | 85639 (0.8) | 221236 (1.0) | 0.9 |
Unclassified/other repeats | 44615 (0.4) | 97630 (0.4) | 0.4 |
Unique sequence | 5220735 (50.7) | 12236884 (55.1) | 61.4 |
Total Bp Sequenced | 10299288 (100.0) | 22203408 (100.0) | 100.0 |