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Table 1 Summary of genomic imbalances detected by aCGH in this case

From: Molecular cytogenetic characterization of undifferentiated embryonal sarcoma of the liver: a case report and literature review

Chromosome region

Genomic coordinates (NCBI Build 36.3) (bp)

Size (Mb)

Number of genes (Interesting genes)

  

Loss

Gain

 

1pter-p36.33

712558-2243993

 

1.53

73 (NOC2L, TNFRSF18, TNFRSF4)

1p13.1

116168951-117581500

1.4

 

21 (CD9P1, TRIM45)

2pter-p25.3

6477-3368813

 

3.4

19 (TSSC1)

2q11.2-q13

100018907-112693871

12.7

 

129

2q14.1

114650166-115262744

0.6

 

1 (intron of DPP10)

2q14.1

115268926-115418974

 

0.15

1 (intron of DPP10)

2q14.1-q21.3

115425158-136187596

20.8

 

166

2q22.1-q23.3

137775162-153625228

15.9

 

61

2q23.3-q24.1

153631373-159375017

5.7

 

27

2q24.1-q24.3

159381356-165156442

5.8

 

42

2q24.3

165162652-165968804

0.78

 

6

2q24.3

167625090-169268884

1.6

 

9 (STK39)

3pter-p12.1

37570-85662543

85.6

 

718

4pter-p15.2

191-26362651

 

26.4

255 (FGFR3)

4p13

42031490-43193968

 

1.2

4

4p13-p11

43200181-49200003

 

6.0

37

4p11-qter

49275218-191262539

142

 

931

4q31.1

141506279-141625040

 

0.12

2 (SCOC, CLGN)

5pter-p15.31

68753-6212561

 

6.2

49 (AHRR, TRIP13, TERT, NDUFS6, ADAMTS16)

5q21.2

102968812-104225203

1.3

 

0

5q21.3

105381409-105843899

0.47

 

0

5q21.3-q22.1

107493790-110062750

2.6

 

11

5q23.1

118512522-121281380

2.8

 

12

5q23.2-q23.3

124356361-129125131

4.8

 

26

5q31.1-q31.2

133375174-136043822

2.7

 

36 (TCF7)

5q31.2

136231375-136300191

0.07

 

0

5q31.2-q32

136925251-144481375

7.6

 

158 (WNT8A, EGR1)

5q32-q33.1

145268956-148600233

3.3

 

31

5q33.2-q33.3

155168994-156318797

1.5

 

3 (SGCD)

5q34

166500163-166900243

 

0.4

1 (ODZ2)

5q35.2-qter

176325212-180650172

 

4.3

129 (FGFR4, SCGB3A1, FLT4)

6q22.33

129843975-130381431

 

0.54

4

8q24.12-qter

121625189-146262725

24.62

 

210 (HAS2, MYC)

9p24.1

8412749-8731371

0.318

 

2 (PTPRD)

9q34.11

129650050-130125185

0.475

 

20 (NAIF1, CIZ1)

9q34.3

140012561-140225027

0.213

 

3 (CACNA1B)

10pter-q22.1

87523-71568878

71.6

 

585

11pter-p15.4

187565-7193965

7.0

 

298

14q12-qter

25075026-106356252

81.3

 

1049 (IGH)

15q11.2-qter

20262522-100281493

80

 

1084

16pter-p13.3

53-5456277

5.5

 

267

17pter-p12

18890-15187519

15.2

 

334 (TP53)

19p13.3-p13.11

2250072-19137619

19.1

 

586

19p13.11

19143788-19306349

 

0.16

9

20q11.1-q13.32

28125216-56612507

 

28.5

408

20q13.32-qter

57343940-62387649

5.0

 

110

21q22.13-q22.3

38293990-45156291

 

6.9

120

22q12.3

31618959-34862722

3.3

 

23

22q13.1

36256330-37868873

 

1.6

55

22q13.1-qter

37975088-49581355

11.6

 

207